Overview

IDAllelesLocationGenome BuildSource
rs4649203G/Achr1: 2419343038dbsnp146
rs4649203G/A chr1: 24519920 37dbsnp146_grch37
rs4649203T/C chr1: 24193430 38ImmunoChip
rs4649203T/C chr1: 24519920 37ImmunoChip
rs4649203T/C chr1: 24392507 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs59248333rs4649203rs4649203130

Criteria

No results found

Functional Information

Gene function properties for rs4649203 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs4649203, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.