Overview

IDAllelesLocationGenome BuildSource
rs2961919G/Achr5: 16047612738dbsnp146
rs2961919G/A chr5: 159903134 37dbsnp146_grch37
1kg_5_159835712A/G chr5: 160476127 38ImmunoChip
1kg_5_159835712A/G chr5: 159903134 37ImmunoChip
1kg_5_159835712A/G chr5: 159835712 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17477281rs2961919rs2961919123

Criteria

No results found

Functional Information

Gene function properties for rs2961919 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs2961919, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.