Overview

IDAllelesLocationGenome BuildSource
rs2066808A/Gchr12: 5634418938dbsnp146
rs2066808A/G chr12: 56737973 37dbsnp146_grch37
imm_12_55024240A/G chr12: 56344189 38ImmunoChip
imm_12_55024240A/G chr12: 56737973 37ImmunoChip
imm_12_55024240A/G chr12: 55024240 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57258444rs2066808rs2066808130

Criteria

rs2066808 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 

Functional Information

Gene function properties for rs2066808 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  STAT2 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2066808, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.