IDAllelesLocationGenome BuildSource
rs1646019C/Tchr16: 1126582338dbsnp146
rs1646019C/T chr16: 11359680 37dbsnp146_grch37
imm_16_11267181A/G chr16: 11265823 38ImmunoChip
imm_16_11267181A/G chr16: 11359680 37ImmunoChip
imm_16_11267181A/G chr16: 11267181 36ImmunoChip
rs1646019A/G chr16: 11265823 38ImmunoChip
rs1646019A/G chr16: 11359680 37ImmunoChip
rs1646019A/G chr16: 11267181 36ImmunoChip


Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build


rs1646019 meets the following criteria:

Criteria Name
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs1646019 as derived from dbSNP:
  • in intron


Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).



Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs1646019, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.