IDAllelesLocationGenome BuildSource
rs12708716A/Gchr16: 1108601638dbsnp146
rs12708716A/G chr16: 11179873 37dbsnp146_grch37
rs12708716T/C chr16: 11086016 38ImmunoChip
rs12708716T/C chr16: 11179873 37ImmunoChip
rs12708716T/C chr16: 11087374 36ImmunoChip
imm_16_11087374T/C chr16: 11086016 38ImmunoChip
imm_16_11087374T/C chr16: 11179873 37ImmunoChip
imm_16_11087374T/C chr16: 11087374 36ImmunoChip


Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build


rs12708716 meets the following criteria:

Criteria Name
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 

Functional Information

Gene function properties for rs12708716 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  CLEC16A 


Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).



Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs12708716, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.